Version Compatibility

Reference examples tested with: pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Contamination Detection

"Check my assembly for contamination" → Evaluate genome completeness and detect contaminating sequences using marker gene sets or chimeric contig detection.

• CLI: checkm2 predict --input assembly.fa, gunc run, gtdbtk classify_wf

CheckM2 (Recommended)