Version Compatibility

Reference examples tested with: Canu 2.2+, Flye 2.9+, hifiasm 0.19+, wtdbg2 2.5+

Before using code patterns, verify installed versions match. If versions differ:

• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Long-Read Assembly

"Assemble a genome from long reads" → Build a contiguous de novo assembly from ONT or PacBio reads, producing complete or near-complete chromosomes.

• CLI: flye --nano-raw reads.fq -o output (ONT), canu -p asm -d output -nanopore reads.fq (ONT/PacBio)

Tool Comparison