Version Compatibility

Reference examples tested with: anndata 0.10+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+, squidpy 1.3+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Spatial Analysis for IMC

"Analyze spatial cell interactions in my IMC data" → Build spatial neighborhood graphs, test for cell-cell interaction enrichment, and identify spatial domains from multiplexed imaging data.

• Python: squidpy.gr.spatial_neighbors(), squidpy.gr.nhood_enrichment()

Build Spatial Graph