Version Compatibility

Reference examples tested with: ggplot2 3.5+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, xcms 4.0+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Lipidomics Analysis

"Analyze my lipidomics data" → Identify and quantify lipid species by class and chain composition, then perform differential lipid analysis and pathway interpretation.

• R: lipidr::as_lipidomics_experiment(), de_analysis()
• CLI: MS-DIAL or LipidSearch for lipid identification

R Workflow with lipidr