Version Compatibility

Reference examples tested with: ReactomePA 1.46+, clusterProfiler 4.10+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Metabolomics Pathway Mapping

"Map my metabolites to pathways" → Perform pathway enrichment and topology analysis using KEGG, Reactome, or MetaboAnalyst to interpret metabolomics results in biochemical context.

• R: MetaboAnalystR::SetMetabolomeFilter() → PerformDetailMatch() → pathway topology

KEGG Pathway Enrichment

library(MetaboAnalystR)