Version Compatibility

Reference examples tested with: scanpy 1.10+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

MOFA2 Integration

"Find shared variation across my omics layers" → Discover latent factors that capture shared and modality-specific sources of biological variation in an unsupervised manner.

• R: MOFA2::create_mofa() → prepare_mofa() → run_mofa()
• Python: mofapy2 for training, muon for downstream

Prepare Multi-Omics Data

Goal: Load and align multiple omics matrices into a consistent format for MOFA2 input.