Version Compatibility

Reference examples tested with: matplotlib 3.8+, pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Spectral Library Management

"Build a spectral library for DIA analysis" → Create, filter, and manage spectral libraries from DDA experiments or predicted spectra for use in DIA quantification workflows.

• CLI: spectrast (TPP) for consensus library building from search results
• CLI: Prosit/DeepLC for deep learning-predicted spectral libraries
• Python: pandas for library format conversion and quality filtering

Build Library from DDA Data