Version Compatibility

Reference examples tested with: pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Quality Reports

Generate quality reports for FASTQ files using FastQC and aggregate multiple reports with MultiQC.

"Run quality control on FASTQ files" → Generate per-base quality, adapter content, and duplication plots, then aggregate across samples.

• CLI: fastqc *.fastq.gz then multiqc .

FastQC - Single Sample Reports