Version Compatibility

Reference examples tested with: rmarkdown 2.25+, knitr 1.45+, DESeq2 1.42+, ggplot2 3.5+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

R Markdown Reports

"Create an R Markdown report" → Write reproducible R-based documents combining code chunks, results, and narrative that render to HTML/PDF/Word.

• R: rmarkdown::render('report.Rmd'), or Knit button in RStudio

Basic Document Structure