Version Compatibility

Reference examples tested with: pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

miRDeep2 Analysis

"Discover novel miRNAs from my small RNA-seq data" → Identify known and novel miRNAs by mapping reads to the genome and scoring precursor hairpin structures using a probabilistic model.

• CLI: mapper.pl for read mapping, miRDeep2.pl for de novo miRNA prediction

Workflow Overview