Version Compatibility

Reference examples tested with: Cellpose 3.0+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+, scipy 1.12+, spatialdata 0.1+, squidpy 1.3+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Spatial Multi-omics Analysis

"Analyze my high-resolution spatial data" → Process subcellular-resolution spatial platforms (Xenium, MERFISH, Slide-seq, Stereo-seq) including cell segmentation, binning strategies, and multi-modal integration.

• Python: spatialdata + squidpy for unified multi-platform analysis

Platform Comparison