Version Compatibility

Reference examples tested with: MiXCR 4.6+, ggplot2 3.5+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Immcantation Analysis

"Analyze B cell repertoire evolution and clonal lineages" → Study somatic hypermutation, build B cell phylogenies, and track affinity maturation using the Immcantation framework for BCR repertoire analysis.

• R: alakazam::plotMutability(), dowser::buildPhylipLineage(), scoper::spectralClones()

Requires Immcantation suite: alakazam 1.3+, shazam 1.2+, scoper 1.3+, dowser 2.0+, tigger 1.1+.

Load and Format Data