Version Compatibility

Reference examples tested with: MiXCR 4.6+, VDJtools 1.2.1+

Before using code patterns, verify installed versions match. If versions differ:

• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

TCR/BCR Analysis Pipeline

"Analyze my TCR/BCR repertoire sequencing data end-to-end" → Orchestrate MiXCR clonotype extraction, VDJtools diversity/repertoire analysis, Immcantation SHM and lineage analysis, and visualization of V/J gene usage and clonal dynamics.

Pipeline Overview

FASTQ → MiXCR align → Assemble → Export → VDJtools diversity → Visualization