CellCellCommunicationPlots Process Configuration

Purpose

Visualize cell-cell communication inference results from CellCellCommunication process. Creates publication-ready network diagrams, heatmaps, and interaction plots to help interpret ligand-receptor interactions between cell types.

When to Use

• After running CellCellCommunication to visualize inferred interactions
• To create publication-quality figures for cell communication analysis
• For exploring signaling pathways between cell populations
• When needing multiple visualization types (network, heatmap, box plots) for comprehensive analysis
• To subset and focus on specific pathways or cell type pairs of interest

Configuration Structure

Process Enablement

[CellCellCommunicationPlots]
cache = true  # Recommended to skip replotting when only adjusting parameters