ClusterMarkersOfAllCells Process Configuration

Purpose

Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, Myeloid cells, NK cells, etc.) in mixed immune cell populations.

When to Use

• After SeuratClusteringOfAllCells: Runs on all cells before T/B selection
• Before TOrBCellSelection: Provides markers to identify which clusters are T/B cells
• Broad cell type identification: Distinguish major immune cell types from mixed populations
• Mixed cell populations: When your data contains T, B, Myeloid, NK, and other cell types
• Initial cell typing: First-pass identification before detailed annotation
• Data quality check: Verify expected cell types are present in your data

Configuration Structure

Process Enablement