CRN Topology Skill: Reaction Network Generation

Status: ✅ Production Ready Trit: +1 (PLUS - generator) Color: #D82626 (Red) Principle: Network structure → Dynamical behavior Frame: Hypergraph topology of chemical reactions

Overview

CRN Topology generates and analyzes the graph structure of chemical reaction networks. The topology determines qualitative dynamics—multistability, oscillations, and computational capacity.

1. Species-reaction graph: Bipartite hypergraph
2. Stoichiometric matrix: Linear algebra of reactions
3. Deficiency: Gap between complexes and rank
4. Persistence: Network admits no extinctions