Bulk RNA-seq Dataset Curation

This skill guides processing of bulk RNA-seq datasets for VEuPathDB resources.

Prerequisites Check

This workflow requires the following repositories in veupathdb-repos/:

• ApiCommonPresenters
• EbrcModelCommon

First, run the repository status check to verify repositories are present:

Note: this script is located in the skill directory

bash scripts/check-repos.sh ApiCommonPresenters EbrcModelCommon

If repositories are missing, the script will provide clone instructions.