Envi-Pkg-Local Skill

Comprehensive assistance with ENVI (Environmental Niche Integration) for spatial transcriptomics and single-cell RNA sequencing data integration.

When to Use This Skill

This skill should be triggered when:

Core ENVI Tasks:

• Setting up ENVI models for spatial and scRNA-seq data integration
• Computing COVET (Cellular Niche Covariance) matrices
• Training ENVI variational autoencoders
• Performing gene imputation for spatial data
• Predicting spatial context for dissociated single cells