Find TODO and FIXME Comments

Search the training materials codebase for TODO and FIXME comments to identify pending work.

Execute from repository root. See ../shared/repo-conventions.md for directory structure.

Tasks to Perform

1. Search Markdown Files

   • Use Grep to find TODO and FIXME in docs/**/*.md
   • Capture file path, line number, and full comment
   • Note context (which module/lesson)

2. Search Nextflow Scripts

   • Find TODO/FIXME in **/*.nf files
   • Distinguish between training examples and solution code
   • Note if in core examples or side-quests