SeuratClusteringOfAllCells Process Configuration

Purpose

Performs coarse clustering on ALL cells (including T cells, B cells, and non-T/B cells) before cell type selection. This process identifies broad cell populations to enable subsequent T/B cell selection via TOrBCellSelection. Unlike SeuratClustering which works on already-selected T/B cells, this provides initial clustering on heterogeneous cell populations.

When to Use

• Mixed cell populations: When your data contains both T/B cells AND non-T/B cells
• Pre-selection clustering: Required upstream of TOrBCellSelection process
• Broad cell type identification: To identify major cell lineages before fine-grained analysis
• TCR/BCR data analysis: When you have scRNA-seq + scTCR/scBCR data with mixed populations
• Do NOT use when: All cells are already T/B cells (use SeuratClustering instead)

Configuration Structure

Process Enablement

[SeuratClusteringOfAllCells]
cache = true