bulk-rnaseq
Pass
Audited by Gen Agent Trust Hub on Jun 13, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill facilitates the use of industry-standard bioinformatics software such as STAR, Salmon, and FastQC for genomic data analysis. The provided workflows and instructions align with established scientific practices for reproducible research.
- [COMMAND_EXECUTION]: The instructions and scripts contain shell commands for local bioinformatics processing and pipeline execution via Nextflow. These operations are limited to the skill's documented scope and do not involve suspicious privilege escalation or unauthorized system modifications.
- [EXTERNAL_DOWNLOADS]: The skill references established bioinformatics tool repositories and package registries including Bioconda and PyPI. These are well-known technology resources within the scientific community, and the references are used for standard dependency management and tool installation.
- [SAFE]: Python scripts within the skill (build_counts_matrix.py, validate_samplesheet.py) perform file I/O on local biological data files, such as FASTQ sequencing reads and TSV/CSV quantification matrices. The scripts are strictly functional for data validation and matrix construction and do not access sensitive environment variables, system credentials, or configuration files.
Audit Metadata