The Agent Skills Directory

[SAFE]: No security issues detected. The skill provides well-documented bioinformatics workflows using legitimate libraries and includes proactive warnings about data security (e.g., avoiding the use of the pickle module for untrusted data).
[EXTERNAL_DOWNLOADS]: The skill references standard, well-known Python packages from official registries, such as PyDESeq2, pandas, and anndata, which are routine for the intended use case.
[COMMAND_EXECUTION]: The provided Python script run_deseq2_analysis.py performs data processing using standard libraries and does not contain unsafe system calls or unsanitized command execution.
[CREDENTIALS_UNSAFE]: No hardcoded credentials, secrets, or access patterns to sensitive configuration files were found.
[DATA_EXFILTRATION]: No network operations targeting untrusted domains or suspicious data transfer patterns were identified; the skill focuses on local data analysis.

pydeseq2