mdanalysis
Pass
Audited by Gen Agent Trust Hub on Sep 16, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The instructions include steps to install the
MDAnalysislibrary using standard package managers (pip, conda) and by cloning the official repository from GitHub (github.com/MDAnalysis/mdanalysis.git). These are standard procedures for utilizing this scientific library. - [COMMAND_EXECUTION]: The skill contains shell commands for environment setup and Python scripts that interact with the file system to load trajectory data (e.g., PDB, DCD, XTC files) and export analysis results (e.g., plots, density maps, and aligned trajectories). All operations are consistent with the documented purpose of molecular simulation analysis.
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