cellxgene-census
Originally fromk-dense-ai/claude-scientific-skills
Installation
SKILL.md
CZ CELLxGENE Census
Overview
The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single-cell genomics data from CZ CELLxGENE Discover. This skill enables efficient querying and analysis of millions of cells across thousands of datasets.
The Census includes:
- 61+ million cells from human and mouse
- Standardized metadata (cell types, tissues, diseases, donors)
- Raw gene expression matrices
- Pre-calculated embeddings and statistics
- Integration with PyTorch, scanpy, and other analysis tools