scikit-bio
Pass
Audited by Gen Agent Trust Hub on Oct 12, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTION
Full Analysis
- [SAFE]: The skill provides standard documentation and code examples for the scikit-bio library. Analysis did not reveal any prompt injection, malicious command execution, or unauthorized data exfiltration attempts.
- [INDIRECT_PROMPT_INJECTION]: The skill processes untrusted external data in the form of biological file formats such as FASTA, FASTQ, BIOM, and Newick.
- Ingestion points: Ingestion of untrusted data occurs through methods such as
skbio.DNA.read,skbio.TreeNode.read, andskbio.Table.readinSKILL.md. - Boundary markers: The skill relies on standard bioinformatic file formats which use specific headers (e.g., '>' in FASTA) as structural boundaries.
- Capability inventory: The skill allows for file system read/write operations and sequence manipulation based on the parsed contents.
- Sanitization: The underlying
scikit-biolibrary validates inputs against expected biological alphabets (DNA, RNA, Protein) and strict file schemas.
Audit Metadata