Bioresearcher Deep Research

Reference-based biomedical research: interview the user, split the topic into research aspects, investigate each aspect with biomcp tools, then synthesize a succinct, accurately cited report. Harness-agnostic: works with or without a subagent/Task tool.

What it does

• Decomposes a biomedical question (disease, drug, gene, variant, trial landscape, patent space, dataset) into 2-5 independent research aspects.
• Runs one focused worker per aspect - in parallel via the harness's subagent/Task tool when available, sequentially otherwise.
• Workers query the biomcp MCP server (articles/PubMed, ClinicalTrials.gov, genes, variants, drugs, diseases, patents, GEO/SRA/GenBank, Ensembl/PDB) per references/tool-selection.md, collecting PMIDs, DOIs, NCT IDs, and patent IDs as they go.
• Synthesizes all aspect reports into final_report.md with numbered in-text citations and a full bibliography.