ChIP Seq

Version Compatibility

Reference examples assume:

• macs3 3.0+
• samtools 1.18+
• deepTools 3.5+

Before using commands, verify the installed environment:

• CLI: macs3 --version, samtools --version, bamCoverage --version
• If flags differ, inspect --help and adapt rather than forcing the example unchanged.

Overview

Use this skill for: