Differential Expression

Version Compatibility

Reference examples assume:

• pydeseq2 0.4+
• pandas 2.2+
• numpy 1.26+
• matplotlib 3.8+

Verify before use:

• Python: python -c "import pydeseq2, pandas; print(pydeseq2.__version__, pandas.__version__)"

Overview

Use this skill for count-based DE from bulk RNA-seq or similar count matrices when the user needs: