RNA Quantification

Version Compatibility

Reference examples assume recent stable releases of the preferred tools, especially salmon and the other tools listed below.

Before using code or command patterns, verify installed versions match the environment:

• Python: python -c "import <module>; print(<module>.__version__)"
• CLI: <tool> --version
• If signatures differ, inspect the installed help or API and adapt the pattern instead of retrying unchanged.

Overview

Workflow for gene and transcript quantification from RNA-seq reads using alignment-based or alignment-free tools.

When To Use This Skill