scRNA Preprocessing And Clustering

Version Compatibility

Reference examples assume:

• scanpy 1.10+
• anndata 0.10+
• pandas 2.2+
• matplotlib 3.8+

Before using code patterns, verify installed versions match the environment:

• Python: python -c "import scanpy, anndata; print(scanpy.__version__, anndata.__version__)"
• If signatures differ, inspect the installed API and adapt the pattern instead of retrying unchanged.

Overview

Use this skill to turn raw or minimally processed scRNA-seq data into an analysis-ready object with: