The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill installs the cobra library (COBRApy) via uv pip install. This is an established scientific package required for the skill's metabolic analysis functionality.
[DATA_EXFILTRATION]: The library includes a functional feature that performs remote lookups against established scientific repositories, such as BiGG and BioModels, when loading models by identifier. This is a standard behavior for retrieving research models from public databases.
[INDIRECT_PROMPT_INJECTION]: The skill is designed to process external metabolic model files.
Ingestion points: Metabolic models are loaded from the file system using functions like read_sbml_model(), load_json_model(), and load_yaml_model() as described in SKILL.md.
Boundary markers: There are no specialized delimiters defined in the skill instructions to isolate the content of loaded model files from the agent's instruction stream.
Capability inventory: The skill is configured with Read, Write, Edit, and Bash tools, which are used to read model data and write simulation results, such as CSV reports and visualization images.
Sanitization: The skill relies on standard library parsing mechanisms; no additional content sanitization or verification steps are specified for the ingested model files.

alterlab-cobrapy