single-cell-rna-qc

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Tool: LICENSE.txt [1/2] Description: Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1.

Tool: LICENSE.txt [2/2] Description: this License.

Malicious tool definition detected

Tool: SKILL.md Description: --- name: single-cell-rna-qc description: Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.

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Tool: references/scverse_qc_guidelines.md [1/2] Description: # scverse Quality Control Guidelines This document provides detailed information about quality control best practices for single-cell RNA-seq data, following the scverse ecosystem recommendations.

Tool: references/scverse_qc_guidelines.md [2/2]

Malicious tool definition detected

Tool: scripts/qc_analysis.py Description: #!/usr/bin/env python3 """ Quality Control Analysis for Single-Cell RNA-seq Data Following scverse best practices from: https://www.sc-best-practices.org/preprocessing_visualization/quality_control.html This is a convenience script that runs a complete QC workflow using the modular functions from qc_core.py and qc_plotting.py.

Malicious tool definition detected

Tool: scripts/qc_core.py Description: #!/usr/bin/env python3 """ Core utility functions for single-cell RNA-seq quality control.

Malicious tool definition detected

Tool: scripts/qc_plotting.py Description: #!/usr/bin/env python3 """ Visualization functions for single-cell RNA-seq quality control.