single-cell-rna-qc
Single-Cell RNA-seq Quality Control
Automated QC workflow for single-cell RNA-seq data following scverse best practices.
When to Use This Skill
Use when users:
- Request quality control or QC on single-cell RNA-seq data
- Want to filter low-quality cells or assess data quality
- Need QC visualizations or metrics
- Ask to follow scverse/scanpy best practices
- Request MAD-based filtering or outlier detection
Supported input formats:
.h5adfiles (AnnData format from scanpy/Python workflows).h5files (10X Genomics Cell Ranger output)
Default recommendation: Use Approach 1 (complete pipeline) unless the user has specific custom requirements or explicitly requests non-standard filtering logic.
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