The Agent Skills Directory

Standard Bioinformatics Workflow: The skill implements a legitimate workflow for single-cell RNA-seq quality control, following scverse best practices. It uses standard scientific libraries such as scanpy, anndata, and scipy to perform data-driven filtering and visualization.
Restricted Capabilities: The skill's operations are limited to reading specific data formats (.h5ad, .h5), performing mathematical calculations, and saving results (filtered data and plots) to the local filesystem. It does not request network access, elevated privileges, or perform any suspicious command executions.
Data Ingestion Surface: The skill processes external data files, which is a common requirement for bioinformatics tools. While processing external data always presents a theoretical surface for indirect prompt injection via metadata, this skill lacks the necessary capabilities (like network exfiltration or shell access) to make such an attack exploitable.

single-cell-rna-qc