The Agent Skills Directory

[SAFE]: The skill provides documentation and Python snippets for processing bioinformatics data, such as scientific names and Newick tree files. The provided code handles string replacement and basic regex extraction, which are standard practices in data processing.
[INDIRECT_PROMPT_INJECTION]: The skill includes code that reads external data files (Newick trees) and dataframes. This creates a surface for indirect prompt injection if the source data is malicious. However, the logic is limited to pattern matching and formatting, which significantly reduces the risk.
Ingestion points: Reads tree.nwk via open().read() and processes dataframes (SKILL.md).
Boundary markers: None present in the provided snippets.
Capability inventory: Uses Bash (via frontmatter) and standard Python file/regex operations.
Sanitization: None present, though the regex pattern specifically targets scientific name formats.

bioinformatics-visualization