bio-atac-seq-consensus-peakset
Pass
Audited by Gen Agent Trust Hub on Oct 8, 2026
Risk Level: SAFE
Full Analysis
- [DYNAMIC_EXECUTION]: The skill utilizes inline Python scripts within Bash command blocks to perform specific data processing logic (greedy iterative overlap). This is a standard and safe design pattern for bioinformatics pipelines where shell scripting is combined with high-level languages for algorithmic efficiency.
- [INDIRECT_PROMPT_INJECTION]: The skill is designed to process external genomic data files (.narrowPeak). While this creates a data ingestion surface, the processing is handled by specialized bioinformatics utilities (bedtools, awk) and specific Python/R functions that treat the input as structured data rather than natural language instructions, minimizing the risk of prompt injection.
- [COMMAND_EXECUTION]: The skill provides documentation and examples for executing standard command-line tools like featureCounts and bedtools. These are typical operations for the stated purpose of high-throughput sequencing analysis.
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