The Agent Skills Directory

[COMMAND_EXECUTION]: The script examples/pyscenic_workflow.py uses subprocess.run to execute arboreto_with_multiprocessing.py. This script is identified by locating the installed pyscenic package directory at runtime. This is a documented technical workaround to resolve compatibility issues between the Arboreto library and newer versions of Dask.
[EXTERNAL_DOWNLOADS]: The skill instructions and usage guide include wget commands to download motif ranking databases and transcription factor lists from resources.aertslab.org. This domain is the official resource host for the Aerts Lab, which maintains the SCENIC protocol. These are standard, well-known datasets required for the functionality of the pySCENIC tool.

bio-gene-regulatory-networks-scenic-regulons