bio-isoform-switching
Pass
Audited by Gen Agent Trust Hub on Oct 8, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTION
Full Analysis
- [SAFE]: The skill provides legitimate instructions and R code for differential transcript usage analysis in scientific research.
- [SAFE]: External dependencies are standard, reputable Bioconductor packages and bioinformatics tools (e.g., IsoformSwitchAnalyzeR, Salmon) commonly used in the field.
- [SAFE]: External links point to established academic and research organizations such as EMBL-EBI and DTU Health Tech.
- [INDIRECT_PROMPT_INJECTION]: The skill is designed to process external genomic data (GTF, FASTA, and Salmon quantification), creating a standard attack surface for data ingestion.
- Ingestion points: Local file paths for genomic data and quantification results in SKILL.md and examples/isoform_switch_analysis.R.
- Boundary markers: Not present in the scripts or instructions.
- Capability inventory: R script execution and local file system access (read/write).
- Sanitization: Reliant on the specialized parsing logic of standard Bioconductor R libraries.
Audit Metadata