bio-proteomics-peptide-identification
Pass
Audited by Gen Agent Trust Hub on Oct 8, 2026
Risk Level: SAFEINDIRECT_PROMPT_INJECTION
Full Analysis
- [SAFE]: No malicious patterns such as prompt injection, credential exfiltration, persistence mechanisms, or unauthorized command execution were detected. The skill's code and instructions adhere to best practices for proteomics data analysis.- [INDIRECT_PROMPT_INJECTION]: The skill processes external proteomics data files, including mass spectra (mzML) and sequence databases (FASTA), which are standard ingestion points for untrusted data in bioinformatics workflows.
- Ingestion points: FASTA and mzML files processed via pyopenms.SimpleSearchEngineAlgorithm in SKILL.md, and TSV result tables loaded via pandas.read_csv in SKILL.md and examples/fdr_filtering.py.
- Boundary markers: The skill does not define specific delimiters or warnings to isolate spectral metadata or database headers from instructions.
- Capability inventory: Capabilities are limited to scientific data matching, numerical calculation, and local file storage (idXML) using the pyOpenMS and pandas libraries.
- Sanitization: No explicit validation or sanitization of input file metadata is included in the provided code snippets.
Audit Metadata