bio-rna-quantification-tximport-workflow

MEDIUM W011: Third-party content exposure detected (indirect prompt injection risk).

• Third-party content exposure detected (medium risk: 0.30). In the tximport workflow’s required runtime path, the agent ingests user-provided Salmon/kallisto quantification files (e.g., “quant.sf”/“abundance.tsv”) and a user-provided tx2gene CSV, so outsider-authored free text can be posted into those inputs and will be read by the LLM at runtime.