GenVarLoader Public API

GenVarLoader (gvl) reconstructs personalized haplotypes and re-aligns functional genomic tracks on the fly from a reference + variants + BigWig/Table tracks, without writing personalized genomes to disk. Variable-length output is the norm (indels make lengths region- and sample-dependent).

This skill is a pointer-dense overview. Symbol names link to where to find the authoritative docstring or source.

End-to-end shape

import genvarloader as gvl