setup-celltypist-remote-tool

Installation
SKILL.md

Set up CellTypist as a remote tool

Validation status (2026-08-16): working CPU deployment. The live MCP call annotated 80 cells from the official CellTypist sample and completed majority voting. A converted data-only model produced the same 80 labels and probabilities as the digest-pinned upstream model (maximum probability delta 0.0). This is runtime equivalence evidence, not an annotation-accuracy benchmark. Authenticated private Platform import and owner testing passed on 2026-08-16; public publication and independent-caller authorization/isolation remain untested.

Prerequisites

  • Run from the ToolUniverse repository root on Linux with Python 3.12.3.
  • CPU is sufficient for the validated model and sample.
  • Keep provider data, weights, caches, and credentials outside Git.
  • Bind to loopback. A non-loopback bind requires TOOLUNIVERSE_API_TOKEN; never put it in arguments or results.

Run the standard-library contract check before downloading large dependencies:

python scripts/remote_validation/setup_skill_preflight.py --implementation celltypist
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Aug 24, 2026
setup-celltypist-remote-tool — mims-harvard/tooluniverse