bulk-rna-seq-deseq2-analysis-with-omicverse

Installation
SKILL.md

Bulk RNA-seq DESeq2 analysis with omicverse

Overview

Use this skill when a user wants to reproduce the DESeq2 workflow showcased in t_deseq2.ipynb. It covers loading raw featureCounts matrices, mapping Ensembl IDs to symbols, running PyDESeq2 via ov.bulk.pyDEG, and exploring downstream enrichment plots.

Installs
1
GitHub Stars
13
First Seen
Jul 22, 2026
bulk-rna-seq-deseq2-analysis-with-omicverse — omicverse/omicverse-skills