bulk-rna-seq-deseq2-analysis-with-omicverse
Pass
Audited by Gen Agent Trust Hub on Aug 6, 2026
Risk Level: SAFE
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill utilizes official library functions such as
ov.utils.download_geneid_annotation_pair()andov.utils.download_pathway_database()to retrieve genomic annotations and pathway datasets. These are standard operations for bioinformatics workflows and target the library's official data repositories. - [DATA_EXPOSURE]: The skill reads local expression matrices (e.g.,
sample/counts.txt). This is a legitimate requirement for the skill's primary function of analyzing user-provided data and does not involve access to sensitive system directories or credentials. - [PROMPT_INJECTION]: Instructions are written in standard natural language for documentation and do not attempt to override the agent's safety guidelines, ignore previous instructions, or escalate privileges.
- [INDIRECT_PROMPT_INJECTION]:
- Ingestion points: Processes external count data via
ov.io.readand enrichment databases viaov.utils.download_pathway_database(SKILL.md, reference.md). - Boundary markers: Absent; processed data is not wrapped in specific delimiters.
- Capability inventory: Performs complex statistical calculations, plotting, and file system writes (for downloads) within the library's workspace.
- Sanitization: Relies on the
omicverselibrary's internal parsers to validate and process biological data formats.
Audit Metadata