locus-to-gene-mapper-skill
Pass
Audited by Gen Agent Trust Hub on May 14, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- Script Chaining and Execution: The primary script coordinates the mapping process by executing helper scripts like
gtex_eqtl.pyandgenebass_gene_burden.pyviasubprocess.run. This design allows for a modular and extensible pipeline where specific bioinformatics tasks are delegated to specialized components.\n- Scientific Data Retrieval: The tool interacts with well-known and reputable scientific APIs, such as the EBI GWAS Catalog, Open Targets, and the NCBI RefSNP database. These external connections are essential for retrieving real-world genomic data and do not involve executing untrusted remote code.\n- Data Processing Considerations: The skill processes external data from biological repositories to generate its analysis. While it ingests outside information, the script employs deterministic scoring and coordinate normalization to ensure that the final output is based on verifiable evidence rather than arbitrary inputs.
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