rcsb-pdb-skill
Installation
SKILL.md
Operating rules
- Use
scripts/rest_request.pyfor all RCSB PDB and Search API calls. - Use
base_url=https://data.rcsb.org/rest/v1for core metadata,https://search.rcsb.org/rcsbsearch/v2for Search API, andhttps://www.rcsb.orgfor FASTA downloads. - Core entry or assembly lookups usually do not need
max_items; Search API results are better with query pager rows around10andmax_items=10. - Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Prefer core metadata endpoints for focused lookups and Search API POST requests for discovery.
- For FASTA downloads, use
response_format=textso the script returns a shorttext_headunless raw output is requested.