rcsb-pdb-skill

Installation
SKILL.md

Operating rules

  • Use scripts/rest_request.py for all RCSB PDB and Search API calls.
  • Use base_url=https://data.rcsb.org/rest/v1 for core metadata, https://search.rcsb.org/rcsbsearch/v2 for Search API, and https://www.rcsb.org for FASTA downloads.
  • Core entry or assembly lookups usually do not need max_items; Search API results are better with query pager rows around 10 and max_items=10.
  • Re-run requests in long conversations instead of relying on older tool output.
  • Treat displayed ... in tool previews as UI truncation, not literal request content.

Execution behavior

  • Return concise markdown summaries from the script JSON by default.
  • Prefer core metadata endpoints for focused lookups and Search API POST requests for discovery.
  • For FASTA downloads, use response_format=text so the script returns a short text_head unless raw output is requested.
Installs
4
Repository
openai/plugins
GitHub Stars
3.5K
First Seen
Apr 20, 2026
rcsb-pdb-skill — openai/plugins