Metagenomics

Version Compatibility

Reference examples assume:

• fastp 0.23+
• kraken2 2.1+
• bracken 2.8+
• metaphlan 4+
• humann 3.9+

Verify the environment first:

• CLI: kraken2 --version, bracken -v, metaphlan --version, humann --version

Overview

Use this skill for shotgun metagenomics when the user needs: